PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.258700.1
Common NameWRKY18
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 337aa    MW: 37029.2 Da    PI: 6.2402
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.258700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.7e-30159217259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+ver+++dp ++++tY+ eHnh+
  Cucsa.258700.1 159 SDIWAWRKYGQKPIKGSPYPRGYYRCSSSkGCMARKQVERNRSDPGMFIVTYTAEHNHP 217
                     79*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.7E-31149219IPR003657WRKY domain
PROSITE profilePS5081134.773153219IPR003657WRKY domain
SuperFamilySSF1182902.88E-26156219IPR003657WRKY domain
SMARTSM007747.6E-37158218IPR003657WRKY domain
PfamPF031068.8E-26160217IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEVDWDLHAV VRGYSAAPSA ATIVPASSSS SSSSSSSNNP VVPFSFGRDL TNNQMKNHFF  60
SLQDPFQPSN CNSTQELHEL FKPFFPKSQP SPSPPPPPPA PPAPSLLSSP PAPKILTHQK  120
QSTHLPKQLH STSASAPRSK RRKNQLKKVC QVPAESLSSD IWAWRKYGQK PIKGSPYPRG  180
YYRCSSSKGC MARKQVERNR SDPGMFIVTY TAEHNHPAPT HRNSLAGSTR QKPITPSTTA  240
SGSEKLDPKQ PVCSSEEQST ITESKEEKEE LLMAEDEEDD DLGISDLIVN DDFYVGFEEL  300
DSPITDDCFS DPFPANFDLP WLFNGNPDGE IVKLPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-161572191374WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840180.0GU984018.1 Cucumis sativus WRKY protein (WRKY18) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001267594.10.0WRKY transcription factor 22-like
TrEMBLE7CEW70.0E7CEW7_CUCSA; WRKY protein
STRINGPOPTR_0014s08600.15e-92(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42053259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-66WRKY family protein
Publications ? help Back to Top
  1. Ling J, et al.
    Genome-wide analysis of WRKY gene family in Cucumis sativus.
    BMC Genomics, 2011. 12: p. 471
    [PMID:21955985]